BACTERIA
and similar organisms

Notes

Actinomadura madurae

Actinomadura pelletieri

Actinomyces gerencseriae

Actinomyces israeli

Actinomyces spp.

Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans)

Anaplasma spp.

Arcanobacterium haemolyticum (Corynebacterium haenolyticum)

Arcobacter butzleri

Bacteroides fragilis

Bacteroides spp.

Bartonella bacillifonnis

Bartonella quintana (Rochalimaea quintana)

Bartonella (Rochalinea) spp.

Bordetella bronchiseptica (Pałeczka oskrzelowa)

Bordetella parapertussis

Bordetella pertussis

T, V

Bordetella spp.

Borrelia burgdorferi

Borrelia duttonii

Borrelia recurrentis

Borrelia spp.

Brachyspira spp.

Brevibacterium linens

A

Burkholderia cepacia

Campylobacter fetus subsp. fetus

Campylobacter fetus subsp. venerealis

Campylobacter jejuni subsp. doylei

Campylobacter jejuni subsp. jejuni

Campylobacter spp.

Cardiobacterium hominis

Cardiobacterium valvarum

Chlamydia abortus (Chlamydophila abortus)

Chlamydia caviae (Chlamydophila caviae)

Chlamydia felis (Chlamydophila felis)

Chlamydia pneumoniae (Chlamydophila pneumoniae)

Chlamydia psittaci (Chlamydophila psittaci) (other than avian strains)

Chlamydia trachomatis (Chlamydophila trachomatis)

Clostridium botulinum

T

Clostridium difficile

T

Clostridium perfringens

T

Clostridium tetani

T, V

Clostridium spp.

Corynebacterium diphtheriae

T, V

Corynebacterium minutissimum

Corynebacterium pseudotuberculosis

T

Corynebacterium ulcerans

T

Corynebacterium spp.

Cytophaga allerginae

A, T

Edwardsiella tarda

Ehrlichia spp.

Eikenella corrodens

Elizabethkingia meningoseptica (Flavobacterium meningosepticum)

Enterobacter aerogenes (Klebsiella mobilis)

Enterobacter cloacae subsp. cloacae (Enterobacter cloacae)

Enterobacter spp.

Enterococcus spp.

Erysipelothrix rhusiopathiae (Włoskowiec różycy)

Escherichia coli (with the exeption of non-pathogenic strains)

Fluoribacter bozemanae (Legionella bozemaniae)

Francisella hispaniensis

Francisella tularensis subsp. holarctica

Francisella tularensis subsp. mediasiatica

Francisella tularensis subsp. novicida

Fusobacterium necrophorum subsp. funduliforme

Fusobacterium necrophorum subsp. necrophorum

Gardnerella vaginalis (Pałeczka pochwowa)

Haemophilus ducreyi

Haemophilus influenzae

V

Haemophilus spp.

Helicobacter pylori

Helicobacter spp.

Klebsiella oxytoca

Klebsiella pneumoniae subsp. ozaenae

Klebsiella pneumoniae subsp. pneumoniae

Klebsiella pneumoniae subsp. rhinoscleromatis

Klebsiella spp.

Legionella pneumophila subsp. fraseri

Legionella pneumophila subsp. pascullei

Legionella pneumophila subsp. pneumophila

Legionella spp.

Leptospira interrogans (all serovars)

Leptospira spp.

Listeria monocytogenes (Pałeczka listeriozy)

Listeria ivanovii subsp. ivanovii

Listeria invanovii subsp. londoniensis

Morganella morganii subsp. morganii (Proteus morganii)

Morganella morganii subsp. sibonii

Mycobacterium abscessus subsp. abscessus

Mycobacterium avium subsp. avium (Mycobacterium avium)

Mycobacterium avium subsp. paratuberculosis(Mycobacterium paratuberculosis)

Mycobacterium avium subsp. silvaticum

Mycobacterium chelonae

Mycobacterium chimaera

Mycobacterium fortuitum

Mycobacterium intracellulare

Mycobacterium kansasii

Mycobacterium malmoense

Mycobacterium marinum

Mycobacterium scrofulaceum

Mycobacterium simiae

Mycobacterium szulgai

Mycobacterium xenopi

Mycoplasma hominis

Mycoplasma pneumoniae

Mycoplasma spp.

Neisseria gonorrhoeae

Neisseria meningitidis

V

Neorickettsia sennetsu (Rickettsia sennetsu, Ehrlichia sennetsu)

Nocardia asteroides

Nocardia brasiliensis

Nocardia farcinica

Nocardia nova

Nocardia otitidiscaviarum

Nocardia spp.

Pantoea agglomerans

A, T

Pasteurella multocida subsp. gallicida (Pasteurella gallicida)

Pasteurella multocida subsp. multocida

Pasteurella multocida subsp. septica

Pasteurella spp.

Peptostreptococcus anaerobius

Plesiomonas shigelloides

Porphyromonas spp.

Prevotella spp.

Proteus mirabilis

Proteus penneri

Proteus vulgaris

Providencia alcalifaciens (Proteus inconstans)

Providencia rettgeri (Proteus rettgeri)

Providencia spp.

Pseudomonas aeruginosa

T

Rhodococcus hoagii (Corynebacterium equi)

Rickettsia canadensis

Rickettsia montanensis

Rickettsia spp.

Saccharomonospora viridis

A

Saccharopolyspora rectivirgula

A

Salmonella enterica (choleraesuis) subsp. arizonae

Salmonella Enteritidis

Salmonella Paratyphi A, B, C

V

Salmonella Typhimurium

Salmonella (other serovars)

Shigella boydii

Shigella dysenteriae, inne niż Typ 1

Shigella flexneri

Shigella sonnei

Staphylococcus aureus

T

Streptobacillus moniliformis

Streptococcus agalactiae

Streptococcus dysgalactiae subsp. equisimilis

Streptococcus pneumoniae

T, V

Streptococcus pyogenes

T

Streptococcus suis

Streptococcus spp.

Streptomyces albus

A

Streptomyces spp.

A

Thermoactinomyces thalpophilus

A

Thermoactinomyces vulgaris

A

Treponema caratem

Treponema pallidum

Treponema pertenue

Treponema spp.

Trueperella pyogenes

Ureaplasma parvum

Ureaplasma urealyticum

Vibrio cholerae (including El Tor)

T, V

Vibrio parahaemolyticus (Benecka parahaemolytica)

Vibrio spp.

Yersinia enterocolitica subsp. enterolitica

Yersinia enterocolitica subsp. palearctica

Yersinia pseudotuberculosis

Yersinia spp.

VIRUSES

Bunyavirales (O)

  Hantaviridae (F)

    Orthohantavirus (G)

Prospect Hill Orthohantavirus

Puumala Orthohantavirus (Hantavirus species causing Nephropathia Epidemica [NE])

Other hantaviruses known to be pathogenic

  Nairoviridae (F)

    Orthonairovirus (G)

Dugbe Orthonairovirus

Hazara Orthonairovirus

Nairobi sheep disease orthonairovirus

Other nairoviruses known to be pathogenic

  Peribunyaviridae (F)

    Orthobunyavirus (G)

Bunyamwera orthobunyavirus (Germiston virus)

California encephalitis orthobunyavirus

Other orthobunyaviruses known to be pathogenic

  Phenuiviridae (F)

    Phlebovirus

Bhanja phlebovirus

Punta Toro phlebovirus

Sandfly fever Naples phlebovirus (Toscana Virus)

Other phleboviruses known to be pathogenic

Herpesvirales (O)

  Herpesviridae (F)

    Cytomegalovirus (G)

Human betaherpesvirus 5 (Cytomegalovirus)

    Lymphocryptovirus (G)

Human gammaherpesvirus 4 (Epstein-Barr virus)

    Rhadinoovirus (G)

Human gammaherpesvirus 8

D

    Roseolovirus (G)]

Human betaherpesvirus 6A (Human B-lymphotropic virus)

Human betaherpesvirus 6B

Human betaherpesvirus 7

   Simplexvirus (G)

Human alphaherpesvirus 1 (Human herpesvirus 1, Herpes simplex virus type 1)

Human alphaherpesvirus 2 (Human herpesvirus 2, Herpes simplex virus type 2)

    Varicellovirus (G)

Human alphaherpesvirus 3 (Herpesvirus varicella-zoster)

V

Mononegavirales (O)

  Paramyxoviridae (F)

    Avulavirus (G)

Newcastle disease virus

    Morbillivirus (G)

Measles morbillivirus

V

    Respirovirus (G)

Human respirovirus 1 (Parainfluenza virus 1)

Human respirovirus 3 (Parainfluenza virus 3)

    Rubulavirus (G)

Mumps rubulavirus

V

Human rubulavirus 2 (Parainfluenza virus 2)

Human rubulavirus 4 (Parainfluenza virus 4)

  Pneumoviridae (F)

    Metapneumovirus (G)

    Orthopneumovirus (G)

Human orthopneumovirus (Respiratory syncytial virus)

  Rhabdoviridae (F)

    Vesiculovirus (G)

Vesicular stomatitis virus, Alagoas vesiculovirus

Vesicular stomatitis virus, Indiana vesiculovirus

Vesicular stomatitis virus, New Jersey vesiculovirus

Piry vesiculovirus (Piry virus)

Nidovirales (O)

  Coronaviridae (F)

    Betakoronavirus (G)

Other Coronaviridae known to be pathogenic

Pikornavirales (O)

  Picornaviridae (F)

    Cardiovirus (G)

Saffold virus

    Cosavirus (G)

Cosawirus A

    Enterovirus (G)

Enterowirus A

Enterowirus B

Enterowirus C

Enterovirus D, Human Enterovirus type 70 (Acute haemorrhagic conjunctivitis virus)

Rhinoviruses

Poliovirus, type 1 and 3

V

    Hepatovirus (G)

Hepatovirus A (Hepatitis A virus, Human Enterovirus type 72)

V

    Kobuvirus (G)

Aichiwirus A (Aichi virus 1)

    Parechovirus (G)

Parechovirus A

Parechovirus B (Ljungan virus)

Other Picornaviridae known to be pathogenic

Unassigned (O)

  Adenoviridae (F)

  Astroviridae (F)

  Arenaviridae (F)

    Mammarenavirus (G)

Lymphocytic choriomeningitis mammarenavirus, neurotropic strains

Lymphocytic choriomeningitis mammarenavirus (other strains)

Mobala mammarenawirus

Mopeia mammarenawirus

Tacaribe mammarenawirus

  Caliciviridae (F)

    Norovirus (G)

Norovirus (Norwalk virus)

Other Caliciviridae known to be pathogenic

  Hepeviridae (F)

    Ortohepevirus (G)

Orthohepevirus A (Hepatitis E virus)

  Flaviviridae (F)

   Flavivirus (G)

Zika virus

Other flaviviruses known to be pathogenic

  Orthomyxoviridae (F)

    Gammainfluenzavirus (G)

Influenza C virus

V ^(c)

    Influenzavirus A (G)

Influenza A virus

V ^(c)

    Influenzavirus B (G)

Influenza B virus

V ^(c)

    Thogoto virus (G)

 Dhori virus (Tick-borne orthomyxoviridae: Dhori)

 Thogoto virus (Tick-borne orthomyxoviridae: Thogoto)

  Papillomaviridae (F)

D ^(d)

  Parvoviridae (F)

    Erytroparvovirus (G)

Primate erythroparvovirus 1 (Human parvovirus, B 19 virus)

  Polyomaviridae (F)

    Betapoliomavirus (G)

Human polyomavirus 1 (BK virus)

D ^(d)

Human polyomavirus 2 (JC virus)

D ^(d)

  Poxviridae (F)

    Molluscipoxwirus (G)

Molluscum contagiosum virus

    Orthopoxvirus (G)

Cowpox virus

Vaccinia virus (incl. Buffalopox virus (e), Elephantpox virus (f), Rabbitpox virus (g))

    Parapoxvirus (G)

Orf virus

Pseudocowpox virus (Milkers’ node virus, parapoxvirus bovis)

    Yatapoxvirus (G)

Tanapox virus

Yaba monkey tumor virus

  Reoviridae (F)

    Seadornavirus (G)

Banna virus

Coltivirus (G)

Rotavirus (G)

Orbivirus (G)

  Retroviridae (F)

 (HTLV-2)

    Lentivirus (G)

Simian Immunodeficiency Virus (SIV) ( h )

⁽⁸⁾

  Togaviridae (F)

    Alphavirus (G)

Bebaru virus

O’nyong-nyong virus

Ross River virus

Semliki Forest virus

Sindbis virus

Other alphaviruses known to be pathogenic

    Rubivirus (G)

Rubella virus

V

  Unassigned (F)

    Deltawirus (G)

Hepatitis delta virus (b)

V, D

PARASITES

Acanthamoeba castellani

Ancylostoma duodenale

Angiostrongylus cantonensis

Angiostrongylus costaricensis

Anisakis smplex

A

Ascaris lumbricoides

A

Ascaris suum

A

Babesia divergens

Babesia microti

Balantidiwn coli

Brugia malayi

Brugia pahangi

Brugia timori

Capillaria philippinensis

Capillaria spp.

Clonorchis sinensis (Opisthorchis sinensis)

Clonorchis viverrini (Opisthorchis viverrini)

Cryptosporidium hominis

Cryptosporidium parvum

Cyclospora cayetanensis

Dicrocoelium dentriticum

Dipetalonema streptocerca

Diphyllobothrium latum

Dracunculus medinensis

Entamoeba histolytica

Enterobius vermicularis

Enterocytozoon bieneusi

Fasciola gigantica

Fasciola hepatica

Fasciolopsis buski

Giardia lamblia (Giardia intestinalis)

Heterophyes spp.

Hymenolepis diminuta

Hymenolepis nana

Leishmania major

Leishmania mexicana

Leishmania peruviana

Leishmania tropica

Leishmania spp.

Loa loa

Mansonella ozzardi

Mansonella perstans

Mansonella streptocerca

Metagonimus spp.

Necator americanus

Onchocerca volvulus

Opisthorchis felineus

Opisthorchis spp.

Paragonimus westermani

Plasmodium spp.

Sarcocystis suihominis

Schistosoma haematobium

Schistosoma intercalatum

Schistosoma japonicum

Schistosoma mansoni

Schistosoma mekongi

Strongyloides stercoralis

Strongyloides spp.

Taenia saginata

Toxocara canis

Toxocara cati

Toxoplasma gonidii (Toxoplazma)

Trichinella nativa

Trichinella nelsoni

Trichinella pseudospiralis

Trichinella spirali

Trichomonas vaginalis

Trichostrongylus orientalis

Trichuris trichiura

Trypanosoma brucei brucei

Trypanosoma brucei gambiense

Wuchereria bancrofti

FUNGI

Aspergillus flavus

A

Aspergillus fumigatus

A

Candida albicans

A

Candida dubliniensis

Candida glabrata

Candida parapsilosis

Candida tropicalis

Cryptococcus neoformans var. neofonnans (Filobasidiella neofonnans var. neofonnans)

A

Cryptococcus neoformans var. gattii (Filobasidiella bacillispora)

A

Emmonsia parva var. parva

Emmonsia parva var. crescens

Epidermophyton floccosum

A

Epidermophyton spp.

Fonsecaea pedrosoi

Madurella grisea

Madurella mycetomatis

Microsporum spp.

A

Nannizzia spp.

Neotestudina rosatii

Paraphyton spp.

Scedosporium apiospermum

Scedosporium prolificans (inflatum)

Sporothrix schenckii

Talaromyces marneffei (Penicillium marneffei)

A

Trichophyton rubrum (Grzyb czerwony)

A

Trichophyton tonsurans

A

Trichophyton spp.

PRION DISEASE AGENTS

Agent of Scrapie